NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207889_1010386

Scaffold Ga0207889_1010386


Overview

Basic Information
Taxon OID3300025042 Open in IMG/M
Scaffold IDGa0207889_1010386 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0008Long. (o)-145.0003Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014628Metagenome261Y
F099431Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0207889_10103861F099431GAGMKQLKKDTLKNGDVFNISFLPRGDDAVSTTQWQTSFRKAKWITDNPNQNCFTAKCKNKAHSYLKFWDMTKDAIRTASTEFASVFVNINGESYEYRGEDD
Ga0207889_10103862F014628AGGAMTKEEIESKFPPIINGTYKKDNPDKEIGYQKWEVIKTYEVEARYEIVAKTKEEAEALLERRETPNEEVDDYGDTFRETIKSKFTNDLSGDEPTTWKKIEECIPSEDTDGDNDFKPFINYEDATWSTDGYEWLKKEDGTNIDKK

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