NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207889_1007151

Scaffold Ga0207889_1007151


Overview

Basic Information
Taxon OID3300025042 Open in IMG/M
Scaffold IDGa0207889_1007151 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0008Long. (o)-145.0003Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F012783Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0207889_10071512F012783N/AMYNSNEREKMIKEYNHSDHIAILSELHTLYKLVNETQSKIDVAEKVNDEMRLLLKKKEDNDDEIPF
Ga0207889_10071513F000423GAGGMTKSPFKDAIFYIKYYAKKHDMVIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEVNNGEPQYRTASKKWEINQTQTLNQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.