Scaffold Ga0207889_1004650

Overview

Basic Information

• Taxon OID: 3300025042
• Scaffold ID: Ga0207889_1004650
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1418
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0008
  • Long. (^o): -145.0003

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080137	Metagenome	115	Y
F103384	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207889_10046502	F103384	GGAG	MTIKAKYYPMTMEQFIEAGRPGEIEPNFDKYPQDRKKDKKITFQEFSDGEQSMNCPTCGFECTHITGVEVFTRGEDKEEHTHTTVDMETNKTTVERIKGHGRNPSGRRDGVILSGYCESNCKFEIEIAQHKGNTFFKSNRTGSVNKDEVE
Ga0207889_10046504	F080137	N/A	MKIQDKVYEEILEHVVRLLSEHHSIEMIAGCLMAIAQRLYKTHLSKEDYNRIMKVASEIDIQPYDIRKGTLH