Basic Information | |
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Taxon OID | 3300025042 Open in IMG/M |
Scaffold ID | Ga0207889_1001905 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-47 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2912 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0008 | Long. (o) | -145.0003 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025390 | Metagenome / Metatranscriptome | 202 | N |
F026127 | Metagenome / Metatranscriptome | 199 | Y |
F047120 | Metagenome / Metatranscriptome | 150 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207889_10019053 | F025390 | AGGAG | MTTHFNNGVTNVVKDKSPLKNAMMPDPFPVTSTQGGGYDFLGQTSFMDDFYSAITRTNTSNNGRGSPGWYLSQTASTQTAAPIADAVGGWLQLDEVNATNDAYNQINTFTAFQLNTGMNAGFEARVAVEDVSTTEMVIGFVDTDVTSGVVNITDGLYFSNFSDPDSITAGTSLYLHCEKNGTITSSSALVDPYTGSTFVIEDGALQAASATQIATPSNSFIFGFNIVPKGSNGNVNTAVIQAYLGPVGKQPLPVASIATTNLPDDLALGLMMGTKNNTTTAAIMWVDYVKAISSRSFGSSTTK |
Ga0207889_10019054 | F047120 | AGGAG | MFALKTQQLTASGQVTTKVSAGSNTLSAPARVLGLTVQCGATEGKIDLVDDGASGTVKFTQVTPAIKAGAEDMLQFDFPEMGLKFDTDLYVYFNHATKVNVIYG |
Ga0207889_10019055 | F026127 | GGAGG | MFSLAIISALNIIGCGIYEGMSMKPHKTSVTTTYGQDEVDKANDSKDQTKDSMQIIVKQEFLWKE |
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