Scaffold Ga0208670_105376

Overview

Basic Information

• Taxon OID: 3300025038
• Scaffold ID: Ga0208670_105376
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1819
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F056907	Metagenome	137	N
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208670_1053763	F074138	AGGAG	LINWNKLYIHPSNNTTDEDIMDFIEWVSRKAERLGFRVELKRHEKSGSGSAEAISHNPLDKSDETY
Ga0208670_1053764	F056907	N/A	VPDNAYYIPNESSGGPKLPSGEHKAIIVALDVSENIKCGGFIADIFKPVYRVVDSEYANADVKDNGIFRYKDKPGYDFQAGRNWGFAKFCTILGLDKKQDGKITLPYLEIDMIDGVKVLIEVSYKSFVNDTGKPVRYPVALLKEKLGDVPF
Ga0208670_1053765	F021867	GAGG	MKKNENVDWDKVNRGKVRYGFALELYKKGGILKPSELGRIEAFVGYVMDGVEDDSTVIEAPVSRLMPSEECKQVIRTETEGSKAFVKAMVHIDSEGLKEKDLDRVLSALDNGKITMDNLQDSLDRIASIKKSYK