Scaffold Ga0208670_102803

Overview

Basic Information

• Taxon OID: 3300025038
• Scaffold ID: Ga0208670_102803
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2951
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009537	Metagenome / Metatranscriptome	316	N
F010426	Metagenome / Metatranscriptome	304	Y
F100970	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208670_10280311	F010426	AGGAG	MEKWKELGKRKKFWIAVGVIVVLAIIGWATGWWSSPDVPVQ
Ga0208670_1028033	F009537	AGGAG	MNVDSRIITLALFLIAQSVGAIWWASGLSSEVNRLSGLVDKSDQFQTEIQRAVSGLDVLNFKVEELWKAIERLEEADNVLRDVDNEIMVQHEQIFSWLAEGEAEQTAKGNPYGG
Ga0208670_1028037	F100970	GGA	VTKIQKIILDHYKSLCDSETALKIMSNHTNNFKIFLGVVEKKLESRKPKENYDAGKEEAR