Scaffold Ga0208670_100518

Overview

Basic Information

• Taxon OID: 3300025038
• Scaffold ID: Ga0208670_100518
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10088
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045143	Metagenome	153	Y
F062676	Metagenome / Metatranscriptome	130	N
F070005	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208670_10051817	F062676	N/A	MKVKGKSVYNNENALEFAKSVRGQYIISQALVIASSVLEKYEVEEDITRAEPSNRLDMEYLLRAFPLYRIHEQTVWEDDNEKGG
Ga0208670_10051818	F070005	GGAGG	MKKVVKKKHEPQRYRLDNISMREIKNKYPDKVIDAYAENGRLVIVLDTCRIKFDDRVKQQRGNKYGAVHTGKLVESS
Ga0208670_1005187	F045143	AGG	MEIQVDKLTLGQTIQALKKTSEGLTKLEVEFPDKYIVRKIMTMKHLVDQLDTHKVIFEGNGEADYQN