Scaffold Ga0208670_100051

Overview

Basic Information

• Taxon OID: 3300025038
• Scaffold ID: Ga0208670_100051
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45209
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (59.70%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010875	Metagenome	298	Y
F011090	Metagenome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208670_1000513	F010875	AGG	MTELEKLKKMLVSAHDELRARKQKNTPTFGAMMFMLQAIIQCNAALNERKKHEEN
Ga0208670_1000514	F011090	AGGA	MKRIKHNDLTHYFMTPHEQLPASYLASCEKFFRELGKKRNKFQASSSNATRHNLFTEIEATSRKRQASSAIKKT