NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1056065

Scaffold Ga0210049_1056065


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1056065 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2255
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001911Metagenome / Metatranscriptome618Y
F037574Metagenome / Metatranscriptome167N
F044906Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0210049_10560652F001911N/AMMKRHTDFEQFKQEYKKDFDIPVLSTKEKDIFMYLFLLLRRKMSKGIFPELYNSEIMFSKSDLKALILKNIVIFQNYKRGWIISINSHYITKNAECSFCGAKFNEIVYFRQNSISCPGCGFRMHGSTTAKRVNDYSVAITNIEKVEVIPKVTTSVVKVPTEHVITDIPGNLKITDIVLAPTAMERTIQIANQEVIPFQTGKADKLNALSTLKHIEDKKKEAKAIVIQDNILANFSPMCVNFLKEYFFIQNHIFFSARKYINLKLTEISKDPRFIANASLKGNTLTEVKNACERLCESEEIRGITLIEGEDNRCFGISIPDVCPCM
Ga0210049_10560653F037574N/AMTGIFVKEVSEWTTITVSKDTGKKLKEFFFGKETYNYVIAFLLDYHDEKTYRF
Ga0210049_10560654F044906N/AMNMKMNCDNKKEHMTIEIKRNIANRLKKMSSVGVTYDDIITDLIYYYRATK

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