NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1049143

Scaffold Ga0210049_1049143


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1049143 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2481
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N
F044301Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0210049_10491432F044301N/AMAVTKEIAVGKYKDKISSDKFNKGVSAVTKSPAQQAVAQKDAFMKNTIAGKEVLIKNLSKVSVEEWKAKTIAGFDKLQTKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLSDSYERYLAAQKAVVAVYA
Ga0210049_10491434F019951N/AMTILFKEFWINVSGNNVKCEANNKLYVQKGQKIILHAIQIAPGVDTAAEDVFIMLYRDQEQLTGEGIYHAIIDDYTHTIEFDADAVEGQTFVAKAWGPNARTIHGVYTYEITP
Ga0210049_10491435F026802N/AMYYYVPFSRNLTQGNTEDVATADPGHLVGVFLRFKSGTQPFYPYWGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWCQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYS
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