Scaffold Ga0210042_1007803

Overview

Basic Information

• Taxon OID: 3300025032
• Scaffold ID: Ga0210042_1007803
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6698
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon RBG_16_36_9 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002777	Metagenome	530	Y
F008119	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210042_100780313	F008119	N/A	YVFQQVTNPYVFEGNRQHLLMENPSPSNLINGVDFSESNSFLNTATASVYDMLFVCTEKTNKSITHSVRGVITIGVKRNSTDGTVHFNKIKMNIGYVNSAGNFTSVYDADATHTVSTTSETYVDLCLQDFVRIATDYPLANKRFAVRVSIFAHVNPEGTVGQLGMYHTRGSADSYVEVELKE
Ga0210042_10078032	F002777	N/A	MENTKKNTGANPRISMHTQKISQRITQKINEIGRKTHALKKKENAFYIEALKKARRSTEFPGTDKLRDIAYDKFKQEWKEIDDGKDEVDWLIHRLYISIECEEEEEEK