NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210042_1007803

Scaffold Ga0210042_1007803


Overview

Basic Information
Taxon OID3300025032 Open in IMG/M
Scaffold IDGa0210042_1007803 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6698
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon RBG_16_36_9(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002777Metagenome530Y
F008119Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0210042_100780313F008119N/AYVFQQVTNPYVFEGNRQHLLMENPSPSNLINGVDFSESNSFLNTATASVYDMLFVCTEKTNKSITHSVRGVITIGVKRNSTDGTVHFNKIKMNIGYVNSAGNFTSVYDADATHTVSTTSETYVDLCLQDFVRIATDYPLANKRFAVRVSIFAHVNPEGTVGQLGMYHTRGSADSYVEVELKE
Ga0210042_10078032F002777N/AMENTKKNTGANPRISMHTQKISQRITQKINEIGRKTHALKKKENAFYIEALKKARRSTEFPGTDKLRDIAYDKFKQEWKEIDDGKDEVDWLIHRLYISIECEEEEEEK

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