Scaffold Ga0207900_112510

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207900_112510

Scaffold Ga0207900_112510

Overview

Basic Information
Taxon OID	3300025029 Open in IMG/M
Scaffold ID	Ga0207900_112510 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-39 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	716
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0005	Long. (^o)	-144.9958	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001135	Metagenome / Metatranscriptome	767	Y
F004770	Metagenome	424	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207900_1125101	F004770	N/A	GIMKAQVNFEWRKKDEPDTPAEFYIRTALKAAGYTVGHVAVTGVWDEDKPKIPGGKWDETRLPHSEIAK
Ga0207900_1125102	F001135	GGA	MTTLIYKDKKYKLPFEIKSHSTAMVTRTNPLSGQSTTLPGFAACVYDYTMYKNLKAEELDAKTGQQPGFSDNQDEWQIVRNGINFFRQYFAKEYMVLLD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.