NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207900_109151

Scaffold Ga0207900_109151


Overview

Basic Information
Taxon OID3300025029 Open in IMG/M
Scaffold IDGa0207900_109151 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-39 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)854
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9958Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054918Metagenome139Y
F057670Metagenome136N
F090609Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0207900_1091511F054918AGAAGGMPIDWDQLKPQVENLALEHICRRCKRIIPGAHYRIAGEDGKGNYHIECYERLK
Ga0207900_1091512F090609GGGGGMSTATSLLLYRRLLDGLLNRLDESPLLGPKDYEWLVETLKELSEADPGFRQILAELKPKQCEGCSLTFTPHRPEQIYHDAYCRARANTRKTYYRQKGEKDAD
Ga0207900_1091513F057670AGGAGGMTTENQQPQSRVRYRININRLAKGQLSFDCTVELEGPVELIGVDHDVPSRIALGKLQEAALEESDRLVAALQAKYPMGVE

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