Scaffold Ga0207900_104953

Overview

Basic Information

• Taxon OID: 3300025029
• Scaffold ID: Ga0207900_104953
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-39 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9958

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F025299	Metagenome / Metatranscriptome	202	N
F045147	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207900_1049531	F002150	AGGAG	MVSLTAAQVGVGVARRGKKEVGDLYQRKLGYNFVDLVTKLVLFYSIAFLIAKYMEAVIYFQGGLSTIAGFFGIKMAQADQLPRQWVELFVDTNQQTYSATPTGAGQFNPPGWDKPYDYGTPEHQQAEPYLFPQKEVKYKFWDLINAIVVFYIGWEAYKYYDNANKDPDKKVDFLTLAIFSLLMLAVGVLSFSKFLGRFSF
Ga0207900_1049532	F025299	AGG	MIIEEIPFFTEFILLGIILGFGYGFTKLFLNHARDKNKVRRSERKAKEANGLEDELDSYLNNAPQIAQKIQAELDYLKKNDATPEQMKSLESKLELLNKVQQYEIPLKLIGKPLFKKIVSIIDKVGV
Ga0207900_1049533	F045147	N/A	VFDKPLTFQIKVNTDNATGTYQTGIIPLFCYFGSAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNMLDTGIGL