Scaffold Ga0207900_104640

Overview

Basic Information

• Taxon OID: 3300025029
• Scaffold ID: Ga0207900_104640
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-39 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9958

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F046014	Metagenome	152	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207900_1046401	F086173	N/A	VMLYKDKLPCEPLLHFDSKDAGTIKWTWQTKPAEAIYWKTYKPKKRDIKILSRVTPEQRQKVTKELHQDIIQNEHPPKTKQAKVRTL
Ga0207900_1046402	F046014	GAGG	MIRKRVYLNKPQAEGLIQIFRRNQLLDLLVYVAIYNKNKSPHYKLCIDCPIDTHPRLANKLQDVLHTLVDKHREALKQLEWEKYDDAETPVETLGLTPDFKEYVEEKEKEK
Ga0207900_1046403	F036930	AGGAG	MTEYTHLVEETRRQEAFREWKNKPLYLHASNGKMETKYQDGRIEIEDASTGKKTYDFPEGYEHETYREKLFYRFLGVFTV