NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207900_103851

Scaffold Ga0207900_103851


Overview

Basic Information
Taxon OID3300025029 Open in IMG/M
Scaffold IDGa0207900_103851 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-39 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1421
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9958Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F011970Metagenome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0207900_1038512F002330N/AMIILDIMLKQIKQINETLKIGDKFTIYYAPTFTKNGEDQTTIYEPHQYEINVRSAIWDEKCKINKTGSLVYFDVKRNSHRTAIQTLQAVRIYINKTMYVWNESK
Ga0207900_1038513F011970N/AMFGMKVNNMSNNKVWLVIEKNTYGSSPSSYSVAKHNVSLDEAMNYKLCLEKLSDNKNQSYFLASDVDTALENVAKYHNESVANGSYYKNHPEVKKPV

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