NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207885_113700

Scaffold Ga0207885_113700


Overview

Basic Information
Taxon OID3300025027 Open in IMG/M
Scaffold IDGa0207885_113700 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-31 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.969Long. (o)-130.6661Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006640Metagenome / Metatranscriptome368Y
F081449Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0207885_1137001F081449N/ANPYKIWWIGEKTFTHRGQEETFVRFTIDQEGKQVGGFTYEKKKFVTPFGNMGVVNPNNDEPTGASSFESGTEESRYHPGDRR
Ga0207885_1137002F006640AGGCGGMIGFLIFGLVVLSTICLWILIEERKSWKFLVWFIPILLAIVTSTYVTYTSILGFPKLGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQ

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