Scaffold Ga0207885_113700

Overview

Basic Information

• Taxon OID: 3300025027
• Scaffold ID: Ga0207885_113700
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-31 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 528
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.969
  • Long. (^o): -130.6661

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006640	Metagenome / Metatranscriptome	368	Y
F081449	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207885_1137001	F081449	N/A	NPYKIWWIGEKTFTHRGQEETFVRFTIDQEGKQVGGFTYEKKKFVTPFGNMGVVNPNNDEPTGASSFESGTEESRYHPGDRR
Ga0207885_1137002	F006640	AGGCGG	MIGFLIFGLVVLSTICLWILIEERKSWKFLVWFIPILLAIVTSTYVTYTSILGFPKLGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQ