Scaffold Ga0207885_109214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207885_109214

Scaffold Ga0207885_109214

Overview

Basic Information
Taxon OID	3300025027 Open in IMG/M
Scaffold ID	Ga0207885_109214 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-31 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	662
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.969	Long. (^o)	-130.6661	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020190	Metagenome	225	N
F054101	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207885_1092142	F020190	GGA	MVSSQTILDDVFRFAEKYKNDPMAISASLMVVAKTIYLHRLGPEQTQLMIHLFADNMEQPYIEKVTLH
Ga0207885_1092143	F054101	N/A	MSICKNCDHNCHHSDSGKCASCDCANCEHDIGEALEKLQEVIKPVKTVEFEPDFDLTEH

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