Scaffold Ga0207879_100269

Overview

Basic Information

• Taxon OID: 3300025026
• Scaffold ID: Ga0207879_100269
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8311
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5668
  • Long. (^o): -138.6659

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030895	Metagenome	184	Y
F065112	Metagenome	128	N
F087781	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207879_10026911	F065112	AGGAG	MFLTIEHNQSGELLCNRRLGPYEKLDIEALVSKEIDRLYCGELELEYADNVPNGCAEYYAQIRTRKHDSLCVWTTGDFFYKRETE
Ga0207879_1002693	F087781	GGA	MKWEIDYLTKHLSLDGHYNISFDRLTEGDWFKHLSEKSWVDMREILPAFVEAYDAAGIPLSLQFFERHKAAFFRRAEEDYENRMQDLCNDKVHGGKLIWSLTYASSDSDSCIDAIVKDQYNFSRANIVSAIYDVGDAVYSKSAVCRAITSVTNELQSPMLPEISIFEYREHHWLRVPNCGRKTTNLIMKALKSLIGTKMELSNGNV
Ga0207879_1002694	F030895	GGGGG	MINREEHKRLLEELERLKAENKELREFVEKFQRKTAGMYE