Scaffold Ga0210056_1047987

Overview

Basic Information

• Taxon OID: 3300025022
• Scaffold ID: Ga0210056_1047987
• Source Dataset Name: Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2003
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured archaeal virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019951	Metagenome / Metatranscriptome	226	N
F026802	Metagenome / Metatranscriptome	196	N
F086600	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210056_10479871	F086600	N/A	AGFDKLQAKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLNDSYERYIAAQKAVVAVYA
Ga0210056_10479873	F019951	GAG	MTILFKEFRINVSANNVKCEANNKLYVQKGQKIILHAIQIAPGASTTDEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGQNARTIQGVYMYEITS
Ga0210056_10479874	F026802	N/A	MYYYVPFSRNLTRGDTEEIAVADPGHLIGVFLRFKSGSQGFHPLWGQISISNIGTTKEYLLKNGIYAIFQRDTDGYVLDHWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYS