Scaffold Ga0210043_1094835

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210043_1094835

Scaffold Ga0210043_1094835

Overview

Basic Information
Taxon OID	3300025018 Open in IMG/M
Scaffold ID	Ga0210043_1094835 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	886
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019951	Metagenome / Metatranscriptome	226	N
F026802	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210043_10948352	F026802	N/A	MYYYVPFSRNLTQGNTEDVATADPGHLVGVFLRFKSGTQPFYPYWGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWCQPAFIPLDHDIRANHTVLLETYTWGAQFISVRGHFIYS
Ga0210043_10948353	F019951	N/A	MTILFKEFWINVSGNNVKCEANNKLYVQKGQKITLHAIQIAPGVDTAAEDVFIMLYRDQEQLTGEGIYHAIIDDYTHTIEFDADAVEGQTFVAKAWGPNARTIHGVYTYEITP

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