Scaffold Ga0210043_1058593

Overview

Basic Information

• Taxon OID: 3300025018
• Scaffold ID: Ga0210043_1058593
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1237
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012423	Metagenome / Metatranscriptome	280	Y
F057887	Metagenome / Metatranscriptome	135	N
F076874	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210043_10585931	F057887	GGA	LLAATIAPNLSFSDIIYDDLKVYRDEEGNEYVFDDLGNLYLVSRPWNPTEPIIFLSIDTEKEYEYNTNTYSFVDKPIVYTAGLGVFKLFSKILKKLKNITSTTRVASVLARIKNIRTGKKILYFNRKKGIWTAARDVSFLSLVYFGLSQGGKVATQTGSIAVSLIGLKMFMNFICEEAIQAANMGLFIGSSSEMDAETLRMAI
Ga0210043_10585932	F012423	N/A	MVVTKYKGDTSVINIGISNDADSTAQNYGLSICLKDETGDEYTLVMIGVIGLFLTGVFKKITDTDKIVKNKFYFEKGTTYNYTITAPFPEMKEGKVYGQLGIYDGIDEDSERKAETTYDHVYNFEKKKFSMSVSVNWK
Ga0210043_10585933	F076874	N/A	RLSGEDIVQTSDGIYSTFIVSSDETVQKVEIVFQIKKKYNISINVTWK