Scaffold Ga0210043_1050052

Overview

Basic Information

• Taxon OID: 3300025018
• Scaffold ID: Ga0210043_1050052
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1378
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured archaeal virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014357	Metagenome / Metatranscriptome	263	Y
F019951	Metagenome / Metatranscriptome	226	N
F026802	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210043_10500521	F014357	N/A	KDSKELTFLMYGQPATDVNTSTDTQITKKNNPSEFCDFPFRGGVAAKRKIDLYGILYSSRGADDGDLTHYIHTEYLKLMKGRNVLFDSMRKGLPAHGKNVPVNGAFRAENGYDVGGEYSDIYQKDALIFDQPIRFMNGEELDTYWTTLVLTSAPGTFLARELEIAYILKETQE
Ga0210043_10500522	F019951	N/A	MTILFKEFRIDVSANNVKCEANNKLYVQKGQKIKLHAIQIAPGIDIAHEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGSYARTINGVYMYEITS
Ga0210043_10500523	F026802	N/A	MYYYVPFSRNLTRGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLWGQISISDIGTTKEYLLKNGIYAIFQRNTDGYVQNHWYQPAFIPLDHDIRADHQVLLETFTWATNFILVRGHFIYS