NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210043_1007768

Scaffold Ga0210043_1007768


Overview

Basic Information
Taxon OID3300025018 Open in IMG/M
Scaffold IDGa0210043_1007768 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5052
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N
F044301Metagenome154N
F050143Metagenome / Metatranscriptome145N
F083687Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210043_10077681F083687N/AMEKFKKFKQEYKKDFVIPFLSTTKEKDIFIYIFRLLREKINKGIFPEISNNEIIYSKSDLKNLISKEIIFFMKQKKGWIITINPTYSTKNVECPWCGAKFNEKIYFRLKRMRCPSCMYGMNGSTVAEKFETDDIFLPTKTENINKEENKTEIEKVTTDIKSIPTDIERIMQIARQEIIPFQTNKADKMNAISTLNRIASEKNKSLALIAQKEILANFSDDCIILLREYFFVGDKFFSATKYMNMRLSEVVKDPRFIGNTSRKSMLLAEMKYACEQLCENAEIRKVTELK
Ga0210043_10077683F050143N/AMAKCDWMTETDVKDAMVKGISNAGAAHTFGVNYPRQDPIQSAISAIQKGIWEKNFRDSIGKWEKKLAMVTIEQWKAATTAAASMYAEKASTIGAEEWGKYYEKAKSVIESAATEYIKSDKKKENLIKFWTDMQKLKNL
Ga0210043_10077684F044301N/AMAVTKEMAVAKYKDKISSDRFNKGVSAVTKSPAQQAVAQKDAFAKNTIAGKEVLIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLNDSYERYLAAQKAVVAVYA
Ga0210043_10077686F019951N/AMTILFKDFKISVLGNNVKCEANNKLYIQKGQKITLHAIQIAPGTNTAAEDVFIMLYRDQEQLAGEGIYHAVIDDYTHTIEFDADAVEGQTFVAKAWGPNARTIQGVYMYEITS
Ga0210043_10077687F026802N/AMYFYVPFSRDLTQGNTEEIAVADPGHLVGVFLRFKSGTQPFYPLWGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWCQPAFIPLDHDIRTDHQVLLETFTWGANFISVRGHFVYS
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