Scaffold Ga0210043_1006003

Overview

Basic Information

• Taxon OID: 3300025018
• Scaffold ID: Ga0210043_1006003
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6140
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047487	Metagenome / Metatranscriptome	149	N
F054576	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210043_10060034	F054576	GGA	MEFQLGLIELIAFAGANIGGGWALLKISFRQFELRIKKQFKLLDNAVADVKRVELEIVRADVRNAQTYVTQASHDKALERIFNVLSSMEQKLDGKANAADCEAKHLRHMERK
Ga0210043_10060038	F047487	GAGG	MTTLYGYIAAIVLIVFLGAGWAHEHDKRIVFEAQVEQAGKDAAKHTAEIDAKHLEEMKNAEQNTIIATNSIADWYRAHPAVRVRYANADCSAVPSTDNNPGIPDDSTTTGYVSPYNPESTEQVASRLDQLQKLLRADGVRVE