Basic Information | |
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Taxon OID | 3300025018 Open in IMG/M |
Scaffold ID | Ga0210043_1000391 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45823 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (13.43%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Utah | |||||||
Coordinates | Lat. (o) | 38.9383 | Long. (o) | -110.1342 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022145 | Metagenome | 215 | Y |
F034486 | Metagenome / Metatranscriptome | 174 | Y |
F044785 | Metagenome | 154 | Y |
F044910 | Metagenome | 153 | Y |
F054439 | Metagenome | 140 | Y |
F085177 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210043_100039138 | F054439 | GAG | MKQMAYAKRVFGAQGTTKKEIALDVGYSANVANSISSHIENKPGFNYAMTQLAVDSNNLALAAMSEFKARGFSDFSNKDLIGALNAIGSAWSRFNQTKEKPNDHPSGNKLRTVILQNIENQTLNTQSTPIKKPPVVEVPVEMVEEGEQLDF |
Ga0210043_100039143 | F034486 | N/A | MENEQSLKQRKIALAQSEHASTIIELMKDCMSQVPLVDDKSQWKTIVNTITLDTQGTMLRTMVDLLDAIRKGSLHEPKE |
Ga0210043_100039144 | F022145 | GAG | MPTPKEIKKENYTVQVNYSEDSIKNKLLKFISKSGDEFEIGAEELASMLVGGVNSDTLEAAFVESDRINVVEVGRQLACVLDKDMKKGEKININYTHPYPIEFALIEQVYGIAKINMDVPVLVLTNDYIKDMRSKIRPEQEKFLQKFYSSFKNLKLNKK |
Ga0210043_100039149 | F085177 | N/A | MLGTINDYAVIVNNVLKHVAPKVSPTVKPEYLDFMYKVDNNERIYTDVGVTGLGMAEIIPDGGIGASDAPIQGYSKNYVQMHFTKKVRLTFQTNFFLFESAAAKIKGSVKSKVIEGKNAIEHAKNYLAQSLLAQGFNTSFTWTPINAVGTSTPVATIGADSVEYWSQAHPREDGGAAWSNVIVDGATNSPQFTYSSLLAARRLHSEKKDGRGNPLVSDLDTLVVRRGSTAAQFAKTIKGTIDKGLAPQQTNVFNNAPATDTFKIVELSPYQNLAMDGLMWGMFDSKMMTQDFGFLYIEALPTRAEPAVIDLLGNQDLVLNFNSLAVMGASDLRGWMWSDGDGATV |
Ga0210043_100039150 | F044910 | N/A | MQNDAHSKKIAAPVTAPIGSTTVIAAQTDAYIYIHELIGDLASAGNLIVKCGTRTVASFTLDAGQGITVQDEPGMDGVPRFECRPGEAFILEVTGGTFNGAIDYSFRY |
Ga0210043_10003919 | F044785 | N/A | MKREAKWNTVLEQYLREKKFYCYYELKQTDTESFAFAKIRKVQWDGLQATEKNGLVWKLSDEESRPKPIDGLSTPPLPSYLVIKFKDKFCLIRFEKIVKLRNEGVISVSRSTAEEMSEKIIILKLK |
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