Scaffold Ga0210043_1000385

Overview

Basic Information

• Taxon OID: 3300025018
• Scaffold ID: Ga0210043_1000385
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46217
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (21.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034486	Metagenome / Metatranscriptome	174	Y
F044910	Metagenome	153	Y
F085177	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210043_100038554	F034486	N/A	MDEQEIPVEQSLDQRKIKLAQSEHAPVIIELMKDITAKTPIVAETEWKTIVNAITLEVQGTMLRKMVDYLEDIRKGGLFEPKE
Ga0210043_100038559	F085177	N/A	MVGTINDYAVIVNNVLKHVAPKVSPNVKPEYLDFMYKVDNNERIYTDVGVTGLGMGEIIPDGGIGASDAPIQGYSKNYTQMHFTKKVRLTFQTNFFLFESPAAKIKSSVKSKVLDGKNAIEHAKNYFAQSLLAQGFNTSFTWTPINNVGVSTPVSTIGADAVEYWSQVHPREDGGAAWSNVIVDGATNSPQFTYSSLLAARRLHSLKKDGRGNPLISQLDTLVVRAGSTSAQFAKTIKATIDKGLAPQQTNVFNNAPATDTFKIVELSPYENLAMDGLMWGMFDSNMMNEDYGFKYIEALPTRAEPAVVDALGNQDLVMNFNSLAVMGASDLRGWMWSDGDGATV
Ga0210043_100038560	F044910	N/A	MLQDSHTRKISIPVTAPIGDTTVIAAVDGAWIYVHELIGDLASAGNLTIKAGSRTLAAFTLDSGQGITEQDEPGEDNAPRFECRPGEAFILTVTGGTFNGACHYSLRY