Scaffold Ga0210043_1000003

Overview

Basic Information

• Taxon OID: 3300025018
• Scaffold ID: Ga0210043_1000003
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 444127
• Total Scaffold Genes: 695
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 470 (67.63%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F071164	Metagenome	122	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y
F103138	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210043_100000348	F031713	GAGG	MSNKNLTIDLKSRKDVDGQTFYVGKLKCPVMIDCSEGAVFLVFVSDKGEEQLQIAPMDKKEDD
Ga0210043_1000003566	F103138	N/A	MQGTILLNYNENVKQIEEEEKLSFLRNLLEQMGVTVDDFWTTGTSLSIDQRVKLRTILATYGIQVIDDLDGHMQVYVERELVGEWFKSTYKLKRDLRELDPKKQLYMEMTINFWTIFEEQEQ
Ga0210043_1000003611	F040370	N/A	MASNNFFRSDLYDIYSIIQASMIVYPKETILATLRDFFSKDSYYHFSRDQWGFPNTTDHTNLPPGADIPAGSYGSSALLGDLLSTRLFIGENYRHDGIYYPAILVKNGGIKYVPISINREKGAIQYEDVVFEDGYGNKTIVHSPAYFVTAGAWEGQIIIDIMSRSLRARDDLAQLIGMCFAEISVDSLYDVGIIVKPPIIGAPSETDDRNDKLFRQSITLDIRTEWRREIPVGNIIDAIFFTATFEDLSNPIAPVSPNITINTEVNMLDMLLNS
Ga0210043_1000003675	F094469	N/A	MNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKAKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINDDLVKSKSALATSTEEQLALSVQNNPTYKSKMLELAGKELDIRQIITNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPVEKDGPNTEVRLAEAKLLSETINKKINE
Ga0210043_1000003676	F071164	AGGA	MRISEMLTAIASWLESPDNEAILLAEYDDDCLQIVASSCVQAAALLKITAETVEDIEPPEESKITPEAIDDLANLATAFDESGDPELKKQASVIDELLLTIASPPEAVVQRKDLIDQRIEELKKKYEQPAKDLAESNKIADSEKLIEKSNMTKQMDIHESPLSSRYCPDHAGAQIARVGEHMWQCELDKKIYNFETGFTLNSGVKVPGGDVANQTQMTNIPFYAIFDTRQDRMGY
Ga0210043_1000003679	F038776	GGAG	MSKFAINYSSLENTIYKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDQEEKIASSNWKVSINKISGDLQISYKGDPLVKVAYNKLGIPRAELNKAEQYLPQKLADNKKLVNALLNELNESAKKEVLSKYPELV
Ga0210043_1000003686	F042051	AGGAG	MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGYGQKVSCSAVHGSCPLCAIGDKAKPRWLLGVISRKTGTYKILDISFAVFSQIRKYARNTARWGDPTKYDIDVVVDKNGGATGYYAVQPIPKEPLSAADQQIKDSVDFEDLKRRVTPFTPEMVQKRIDKINGVTGDAVEATPETKSAKAKTAPKSSPAPVSMSDEEDESFPAYDGEQAAS
Ga0210043_1000003690	F036462	GAGG	MDKVSLKDFLGDQMEEDFLQFDLTDIQEVLQSLAEETAHDLAHAELLQQKSLRGADILSEYLCKIVKTVSYLETKINSTKNKVSLEYMAPEGLRTTSEMKKWAGESSPIVEELQIRLAKAKASKVVLEKKYDILIKSHHHFKDISAGMRKTILGYNNTTDKEKVPEGYE
Ga0210043_1000003691	F042607	AGGA	MPLIAIDNKRVDLTYDEIQLFNKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRKTSFEVFLFLMAVMQQQHIRLMYKQLEELSAEVREKIKDK
Ga0210043_10000039	F096147	N/A	MDVENLKKEFVPKYIVNGEQKFYRFLIFYAVNKLMAIKSGKYKGISPELEFMEYYDCFIILYRREGDLTYINLAKLFRKAAHKIYRVMLKEDMTPRNAKFLNLV