NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210022_1008015

Scaffold Ga0210022_1008015


Overview

Basic Information
Taxon OID3300025017 Open in IMG/M
Scaffold IDGa0210022_1008015 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5494
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000449Metagenome / Metatranscriptome1126Y
F017599Metagenome / Metatranscriptome239Y
F041591Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0210022_10080151F041591N/AKEEMERYYARKKASLLRKIRKINKKIKKNIYNPFINDDEK
Ga0210022_100801513F000449N/AMKNKKAGEGISPSPDLDQEYELRTSAPKEEMERYYARKKASLLRKIRKINKKIKKNIYNPFINDDEKQTKNGR
Ga0210022_100801514F017599N/AMKNKQKMEDDIKKRIPPWSENVEKYRISAVYTLISYTTPHYLIFRYYCNSKIYMCETHKSIVLWWISPDEKEKLLAFETKKKEKYKG

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