NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210014_1015111

Scaffold Ga0210014_1015111


Overview

Basic Information
Taxon OID3300025016 Open in IMG/M
Scaffold IDGa0210014_1015111 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3796
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012423Metagenome / Metatranscriptome280Y
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N
F039475Metagenome / Metatranscriptome163N
F086600Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0210014_10151111F086600N/ARAVETGKWNAAKTLTAGKNAHAAVANMKKGTLSDSYERYLAAQKAVVAVYA
Ga0210014_10151113F019951N/AMTILFKEFKIGVTGNNVKCEAYNKLYVQKGQKIILHAIQIAPGINTAAEDVFIMLYRDQEQLTGEGIYHAIIDDYTHTIEFDAGAVEGQTFVAKAWGPNARTIYGVYMYEITS
Ga0210014_10151114F026802N/AMYYYVPFSRDLTQGNTEEIAAADPGHLVGVFLRFKSGVEGFHPFWGQISISNIGTTKEYLLKNGIYAIFQRDTDGFVLDHWYQPAFIPLDHDIRSDHQVLLETMTWGANFISVRGHFIYS
Ga0210014_10151117F039475GAGMEKLNVLIYTKDEDYNPLGSVQLEFFQVDNDGNETYIGKSISGDDGRIEVSKTTLGGEGAKIVVRNAKRLSGEDIVQTSDGKYSTFIVSNDETVQEVEIVFQIKKKHNVHINVTWK
Ga0210014_10151118F012423N/AMVVTKYKGDNCKIDIGISNDANSTSQNYGLSLCLKDDAGVEYTLWVITALVTTISGGFSKITDTNKIKKNKFYLEKATTYNYTATIPLPEFETEGKIYGQFGIYDGTDE
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