NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210014_1008019

Scaffold Ga0210014_1008019


Overview

Basic Information
Taxon OID3300025016 Open in IMG/M
Scaffold IDGa0210014_1008019 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5994
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012423Metagenome / Metatranscriptome280Y
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N
F039475Metagenome / Metatranscriptome163N
F044301Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0210014_10080192F044301N/AMAVTKEIAVTKYKDKISSDTFSKGVSAVTKSPAQQAVAQKDAFAKNTIAGKEALIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLNDSYERYLAAQKAVVAVYA
Ga0210014_10080194F019951N/AMTILFKEFRINVSANNVKCEANNKLYVQKGQKIILHAIQIAPETITADEDAFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDTDAVEGQTFVAKAWGPNARTILGVYMYEITS
Ga0210014_10080195F026802N/AMYYYVPFSRNLTRGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLWGQISISNIGTTKEYLLKNGIYAIFQRDTDAFAQDYWFQPAFIPLDHNIQADHQVLLETFTWGANFISVRGHFIYS
Ga0210014_10080198F039475GAGGMEKLNIFIYTKDEDYNPLGSVQVEFFQVDNNGNETYIGKSISGDDGRIEVSKTALGGEGARIVVRNAKRLSGEDIVQTSDGKYSTFIVSNDETVQKVEIVFQIKKKHNINIHVTWK
Ga0210014_10080199F012423GGAMLEFGISNDADSTSQNYGLSLCIKDETGEEYTLGIIGVIGTVLTGSFSKITDTNKIKKNKFYFEKATTYNYSGAFPFPDMKVGKIYGQLGVYDGTDEDSELKAWTTYDHAYNYEKKKFSMSISVNWK
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