Scaffold Ga0209210_1006500

Overview

Basic Information

• Taxon OID: 3300025015
• Scaffold ID: Ga0209210_1006500
• Source Dataset Name: Contaminated groundwater microbial communities from Rifle, Colorado, USA - Rifle Groundwater A1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6748
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Contaminated Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, USA
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F074102	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209210_100650012	F031713	GGAG	MSNTNLIIDLKAREDKDGKIFYVGKLKAPVAINCAKGAVFLVFISDHGGEQIQIALMNNKDDDE
Ga0209210_100650016	F074102	GGAG	MKKEKTTKQYYFSNKTHQEVVDQLNTDLPVNIKYNEDLVNRVYEKYPFINKAEISLIIKATFQSFRDLLVLGKILNFNKLFFDTKLFVFDYRKNGRIFASLKTKISTPPTMLKNND