Scaffold Ga0209210_1002998

Overview

Basic Information

• Taxon OID: 3300025015
• Scaffold ID: Ga0209210_1002998
• Source Dataset Name: Contaminated groundwater microbial communities from Rifle, Colorado, USA - Rifle Groundwater A1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11825
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Contaminated Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, USA
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038776	Metagenome / Metatranscriptome	165	Y
F042051	Metagenome / Metatranscriptome	159	Y
F094469	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209210_100299815	F042051	N/A	PFQYLVHKYKKDGEAGFGHKVSCSAVHGSCPLCDLGQDKAKARWLLGVISRKTNTYKILDVSFAVYSQIRKLARNTARWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAEDQVKKDAVDFDDLKRRVTPPTPAEVQKRLDKINGADGVAAAPVAPAVVAGKKAAPKQAPKTPTVSMADDEELDQSFPAYAGDEPSV
Ga0209210_10029983	F094469	AGG	MNKTSLKKILEHPDRDEIISKLVIGISPKDVHDWLEAKYTNISEVKFVIAEKSIKSFHENYLDIYNLIQEDITKTKSAVVMSTEDQLELSIQNNPTYKSKMLELASEKIDVRKMVAHLCVVVETRFAQIFDEIQADPRNINTRVDRMFKEYGELLANLLDKYYKFTEQQPDQVVQHNVTLQVVDQHISVFHDVIKKVLSQMDLESSLYFMEVFNEEMCKLKMPSPDKEPSQEMRLADAKVLSETINKKINE
Ga0209210_10029988	F038776	GGAG	MSNFAIDYTGLETKILKKAYKLEDVQDQIERVAFDVVRFKDSDNGANLWQIQSSDDGDYIVSIYQDDESVEKTASDWQVSISKTAGDLQINYKGDPLVKIASSKLGIPRTELSQIERYLPSKLAENKKLVKALLNELTESAKKEVLNKYPELV