NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209210_1002998

Scaffold Ga0209210_1002998


Overview

Basic Information
Taxon OID3300025015 Open in IMG/M
Scaffold IDGa0209210_1002998 Open in IMG/M
Source Dataset NameContaminated groundwater microbial communities from Rifle, Colorado, USA - Rifle Groundwater A1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11825
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Contaminated Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, USA
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038776Metagenome / Metatranscriptome165Y
F042051Metagenome / Metatranscriptome159Y
F094469Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209210_100299815F042051N/APFQYLVHKYKKDGEAGFGHKVSCSAVHGSCPLCDLGQDKAKARWLLGVISRKTNTYKILDVSFAVYSQIRKLARNTARWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAEDQVKKDAVDFDDLKRRVTPPTPAEVQKRLDKINGADGVAAAPVAPAVVAGKKAAPKQAPKTPTVSMADDEELDQSFPAYAGDEPSV
Ga0209210_10029983F094469AGGMNKTSLKKILEHPDRDEIISKLVIGISPKDVHDWLEAKYTNISEVKFVIAEKSIKSFHENYLDIYNLIQEDITKTKSAVVMSTEDQLELSIQNNPTYKSKMLELASEKIDVRKMVAHLCVVVETRFAQIFDEIQADPRNINTRVDRMFKEYGELLANLLDKYYKFTEQQPDQVVQHNVTLQVVDQHISVFHDVIKKVLSQMDLESSLYFMEVFNEEMCKLKMPSPDKEPSQEMRLADAKVLSETINKKINE
Ga0209210_10029988F038776GGAGMSNFAIDYTGLETKILKKAYKLEDVQDQIERVAFDVVRFKDSDNGANLWQIQSSDDGDYIVSIYQDDESVEKTASDWQVSISKTAGDLQINYKGDPLVKIASSKLGIPRTELSQIERYLPSKLAENKKLVKALLNELTESAKKEVLNKYPELV

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