NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209935_1020185

Scaffold Ga0209935_1020185


Overview

Basic Information
Taxon OID3300025006 Open in IMG/M
Scaffold IDGa0209935_1020185 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3857
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0209935_10201852F007322N/AMIGSISDEDAIMIVIDCNAVWTQELAWLVASRVELGHERAIITREYLHSMIEAINDKQDASMMVEHQAMRAEEQAISIAMLHGADRELDSSISIKSIVSHLFHFNLSHNDR
Ga0209935_10201855F007322N/AMIAAINDEDAIMIVIDRNAVWTQELAWLVAFLAELGHERAIITREYLHSMIAAIDDEQETSMMVEHQASRRVELAIITALLHGADRELDSSISIKSIVSHLFHFNLSLTTTKR
Ga0209935_10201856F001866N/AMRMLELAWLIAKRAELEQERAIDQRQYLHSMLEGISDDDSMSIMIDRNACWSAELSWSRSSFADGEQKREIDRRQEHQSTVEGIDDEDATMMLVDRNALRNVELEIS

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