Scaffold Ga0209935_1009057

Overview

Basic Information

• Taxon OID: 3300025006
• Scaffold ID: Ga0209935_1009057
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7206
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007322	Metagenome	353	Y
F026045	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209935_100905716	F007322	GAGG	MIVIDRNAPWILELAWLVAFLAELGHERASFIARKYLHSIVGIGDEQEISMMVEHQAQWAVEQAISIAWVLGADRELDSSITIKSIVSHLFLFNLSLSQRQRDDPSSKLLKPRR
Ga0209935_100905717	F026045	N/A	MTIWSPCERVGKPLIGSNHMHSMFCREGDETSMLVERNGQRPLGATIEGRDVMAFVSERLQSTVVVVSDDDSTLIIDAYSNRKLELTWLVAVRAELEQERAIDRRQYLHSIVVGITDDDSMSIIVDRNACWAIELAWLRSLLADLEQEREIDRRQEHQSMVERIGDDDATMMLVDRNASRIVELEIS
Ga0209935_10090577	F007322	GAGG	MIVIDSKGIRTLELAWLVAVRAELGHERAAITREYLHSTIVAIGDEQETSMMVEHQASKVVELAISIALLLGADRELDSSITIKSIVFHLFHFNLSLSLTTTKR