NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209935_1008525

Scaffold Ga0209935_1008525


Overview

Basic Information
Taxon OID3300025006 Open in IMG/M
Scaffold IDGa0209935_1008525 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7533
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007322Metagenome353Y
F062911Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209935_100852512F062911N/AMIVIDGDAPEILELPFRAELGPEQTTVITRECLHSAIVAIDNEKETSMMVEHQACGIVELAIGITIFLGADRELDSSITIKSIVSHLFHFNLSLSLSHNDKEMIQDPHCSNQRDEDMKLSHTRDTRHERDTKQASKQRATRSNKNQSMKEQRTAPPSLNQPLPHSHEPLLDLHLDDFRCLHMPFQSISREREREREREVWVFDGNPINNKIMWEVLVSMNIKH
Ga0209935_10085258F007322GAGGMIVIDRKAPWMLELAWLVAFLAELGHERAATIIITREYLHSMIPEIDDEQEASMMVERQAKRRVEQAISITLLLGADRELDSSISIKSIVSHLFHFNLSLTTTKRCSKLHTAQAKEMKI

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