Scaffold Ga0209935_1005792

Overview

Basic Information

• Taxon OID: 3300025006
• Scaffold ID: Ga0209935_1005792
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10252
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F007322	Metagenome	353	Y
F062911	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209935_100579212	F001866	N/A	MVVEVGDDDSTLSIDAYSMRILELAWLSALRAELEQERAIDRRQYLHSMVEGISDDDSMSIIIDRNAHWTVELSWSRSILADGEQEREIDRRQEHQSIVVSIGDDDAMMMLVDRNASRTVEVEIS
Ga0209935_100579216	F007322	GAGG	MIVVDREAEWMLELAWLVAFLAELGHERAAAIIITREYLHSMISASDEQETSMMVEHQASRAVVLAISRAFGQGADRELDSSITIKSIVFHLFHFSLSLTTTKR
Ga0209935_10057929	F062911	GAGG	MIVVDRKVEWILELAWLVAFLAELGHEPAAAIIIITREYLHSMIIELGDEQETSMMVECQARWRIERAISTALLLGADRELDSSITIKSIVSHLFHFDLSLSHNDKEMIQAPNCSNQRDEDLKLSHETRDTRHERHQASKQRATRSNKNQSMKEQRTAPPSLNQPLPHSHEPLLDLHHHS