Scaffold Ga0209935_1003830

Overview

Basic Information

• Taxon OID: 3300025006
• Scaffold ID: Ga0209935_1003830
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14817
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F007322	Metagenome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209935_10038301	F007322	GAGG	MTVIDRKAPWIVELAWLVAILTELGHERAAITREYLHSMMPEISDEQEILMMVEHQASRIAELAISTAMLLGADRELDSSITIKSIVSHLFQLQSLTTTKRCSKLQTAQAKEMKI
Ga0209935_10038302	F001866	N/A	MIGDAHSMRIIELAWLIAFGAELEQERAIDQRQHLHSVVASISDDDSMSIIIDRNACWGVELTRLTSFVADREQEREIDRRQEHQSIVAGIGYDDATMMLVDRNALRTVELKIS
Ga0209935_10038306	F007322	N/A	VIIVISDEDAIMIVIDRNAIRTHELAWLGAFLAELGHERAAIIAREYLHSMIPAIDNEQETSMMVEHQAKRHIEQAIGTAGLLGADRELDSSITIKSIVSHPFHLQSLKKLQPKETKI