NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209935_1002913

Scaffold Ga0209935_1002913


Overview

Basic Information
Taxon OID3300025006 Open in IMG/M
Scaffold IDGa0209935_1002913 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19116
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007322Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0209935_100291319F007322GAGGMIVIDRNAIWILELAWLVAFLAELGHERVSFIITREYLHSMIPAIAKEQEISMMIEHQASRIVEQAISTAFFVGADRELDSSITIKSIVSHLFLFNLSLSHSTTKR

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