Scaffold Ga0210035_1051359

Overview

Basic Information

• Taxon OID: 3300025004
• Scaffold ID: Ga0210035_1051359
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1093
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007959	Metagenome / Metatranscriptome	341	Y
F037574	Metagenome / Metatranscriptome	167	N
F044906	Metagenome / Metatranscriptome	153	N
F060596	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210035_10513591	F007959	N/A	METVINFEKFKQEYKKDFDIPVLSAKEKDIYIYLFLSLRRKMSKGMFPELYNSEIMFSKSDLKALVLKNIVIFQNHKKGWIISMNPKYITKTTECSFCGAKFNEIVYFRRNSITCPGCGFRMHGSTTAKRVNEYSVAITNIEKVEAIPKVTTSVVKVP
Ga0210035_10513592	F037574	N/A	MTGIFVEKANEYTTITISKDTAKKLKEFFCGKETYNTVLAFLLDYYDGNSYKL
Ga0210035_10513593	F044906	N/A	MKMDSDNKKEHTTIQAKTNVANRLKKMLRVGVTYDDIITDLIGYYYATK
Ga0210035_10513594	F060596	N/A	MENKEASVGAIPIPDENVAKKKMAKNRTMVLLDRKVVDRLCCCKKRIGNTYNSVISNLLDKYENGQ