Scaffold Ga0210052_1005189

Overview

Basic Information

• Taxon OID: 3300025003
• Scaffold ID: Ga0210052_1005189
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5134
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016358	Metagenome	247	Y
F017599	Metagenome / Metatranscriptome	239	Y
F076872	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210052_100518911	F017599	N/A	MKNKQKMEDDIKKRIPPWSENVEKYRISAVYTLISYTTPHYLIFRYYCNSKIYMCETHKSIVLWWISPDEKEKLLAFETKKKEKYKGLKVYDGTTMEGL
Ga0210052_10051893	F076872	N/A	MAQTLITFILQGGDQRKVFEKPHSLRRIFWGITVLAGNDVWRQTRISFDDPSFYSYYALDGQHKHFEMKGDGISQGDIWVYNASGISLLYTSIEILV
Ga0210052_10051898	F016358	N/A	MTEIKNIAQANKSWAKQSPAIKYVILKRSNSKSDIFVLEE