Scaffold Ga0210052_1000064

Overview

Basic Information

• Taxon OID: 3300025003
• Scaffold ID: Ga0210052_1000064
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96571
• Total Scaffold Genes: 201
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (12.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y
F022890	Metagenome / Metatranscriptome	212	Y
F029285	Metagenome / Metatranscriptome	189	Y
F046978	Metagenome	150	Y
F075520	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210052_1000064126	F075520	N/A	MKTLHYILNTKTDESFDTIEMKFYPNNWEPEMEEDKDYLQSLIDEDPEKFKNCIIETRTF
Ga0210052_1000064140	F015419	N/A	MKYEFKITDEAGNVFLYDVSRSSSDEEKSLNDFILEALQISEDKRKLPFKIQCPNNLEVYPLLKMKFENYGSPLLGDKLEAMHVTWRD
Ga0210052_1000064145	F046978	N/A	MTEDTKQKAVNLSVLVLGTENISGYISYLINKAHLEAQK
Ga0210052_1000064153	F029285	N/A	MKNKADYSKYECPYSHLEKESGHELHGPEGYQDCYGVWCACGFRAPVFYLEPDELGLKLKKETDVATCA
Ga0210052_1000064177	F022890	N/A	MMKSSDHNPYTGKLSESANVLAAIELAKKFKEFADEVYTDEAMGIESSQWVEVINKLEEKRLNCA