Scaffold Ga0209728_1028170

Overview

Basic Information

• Taxon OID: 3300024999
• Scaffold ID: Ga0209728_1028170
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - Groundwater D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.55
  • Long. (^o): -107.97

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045186	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209728_10281702	F045186	GAGG	MPYNGKGNGGSMTSVKGLCSYSKNPVKAAREVAPMCGPGGNADQQKANKLLKKAQAQQDSLRGKAGM