Scaffold Ga0209930_1021270

Overview

Basic Information

• Taxon OID: 3300024992
• Scaffold ID: Ga0209930_1021270
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2986
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Apusozoa → Apusomonadidae → Thecamonas → Thecamonas trahens → Thecamonas trahens ATCC 50062 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007322	Metagenome	353	Y
F026045	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209930_10212705	F007322	GAGG	MIVIDRNVPWIQELAWLAALLAELGHERSAIIIIIAREYLHSIVVFISDEQEISMMVKRQAHRIVELAISIAFLLGADRELDSSNSSVFHLFLFNLSLSLTTTKR
Ga0209930_10212706	F026045	N/A	ISMTTWTPYERGACEPLIGSNHMHSIACREGDETSMLVDCNGRWILATTIEGRDVMAFVSERLQSIVEGVSDEDSTLIIDAYSRSMIELAWLLASRAELEQERAIDRRQYLHSVVTGISDDDSMSIIIDRNARWSEELARLRSMLADREQEREIDRRQEYQSIVAVIDDDDATMMLVDRNALRIVELEIS