Scaffold Ga0209915_1020274

Overview

Basic Information

• Taxon OID: 3300024990
• Scaffold ID: Ga0209915_1020274
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2652
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F007322	Metagenome	353	Y
F062911	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209915_10202742	F062911	GAGG	MIVIDRKAVWMVQLAWLAAFLAELGHERAIITREYLHSMIVVIDDKQETSMMVECKVHRVVELAISKALLLGADRELDSSITIKSIVFHLFHFSLSLSLSHNDKEMIQAPNCSNQRAEDMKLSHTHETREERHQASKQRATRSNKNQSMKDQRTAPPSLNQPLPHSHEPLLDLHHHS
Ga0209915_10202744	F001866	N/A	MVVIVGDDDSALIVNAYSSRMAELAWLLAKRAELEQERAIDRRQYLHSIIESISDDDSMSIMIDRNAHWTVELAWLRSRTADLEQVREIDRRQEYQSIVGGIGNDDAMMMLVDRNASRKVGLGIWWCIIVDARQERLLAQ
Ga0209915_10202745	F007322	GAGG	MIVIDRNAISRVELAWLAELGHERAAIIIIAREYLHSMISSIDDEQEISMMVERQAIRIVELAISIAFLLGADRELDSSITIKRIVSHLFHFNLSLTTTKRCSKLQTAQTKEMKI