Scaffold Ga0209914_1025837

Overview

Basic Information

• Taxon OID: 3300024984
• Scaffold ID: Ga0209914_1025837
• Source Dataset Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2042
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Odonata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location

• Location Name: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F062911	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209914_10258372	F062911	GAGG	MIVIDRKVIRTQELAWLVAFLAELRHERAAIIIIITREYLHSMIVGVGDKQETSMMVEHQALREGERAFSIAIFLGADRELDSSITIKNIVSHLFQFNLSLSLSHNDKEMIQAPNCSSQRDEDMKHLHETRDTRETPSKQATSNEEQQEPIDEGTKNSTSLNHSLTHFHSLLL
Ga0209914_10258373	F001866	GAG	MAFVSERLQSTIVGVGDDDSTLIIDAQSLRMHELAWLMAFGAELEQERAIDRRQYLHSIVEGIRDDDSMSIIVDRNARWISELARLSSLLADLEQEREIDRRQEHQSMVVVVDDDDAMMMLVDRNALRFIELEIS