NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209914_1018714

Scaffold Ga0209914_1018714


Overview

Basic Information
Taxon OID3300024984 Open in IMG/M
Scaffold IDGa0209914_1018714 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2674
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017165Metagenome242Y
F026045Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209914_10187141F017165N/ARGLIAFTAGHRVYVIGANQWLADTKFVWRPDRHRDAPSWMKQAVSTMTMIRSLVDESAMSMIPNELLFEIFSHL
Ga0209914_10187144F026045N/AMHLMARREGDETSMLVERNLNRLSEAAALERRDVMAFVSECLQPAIASVGDDDSALIGNAYSSRKLELARLTAARRAKLEQERAIDRRQYLHSMIEAITDDDSMSIMIDRNARWNEELARLRSMLADLEQEREIKRRQEHQSMVVGIGDDDAIVMLVDRDAQRVAELEVCSSLADRRQERLLAQRP

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