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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024984 Open in IMG/M |
| Scaffold ID | Ga0209914_1000128 Open in IMG/M |
| Source Dataset Name | Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 116084 |
| Total Scaffold Genes | 112 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (25.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Africa: Cape Town | |||||||
| Coordinates | Lat. (o) | -33.927 | Long. (o) | 18.452665 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039434 | Metagenome / Metatranscriptome | 163 | Y |
| F092364 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209914_10001285 | F092364 | N/A | LLDKKQSSCVVGDQCNLHRKGIGLTINDILRNKIQRNKSLRNQSLLVQTTVGITMIMFVIGFTNGICSLITFKNKDLRKVGCGVYLLASSITSLLTITIFTIKFWFVIFIEMYSNVSSVILRTDCVFINPFLKLCLYFDGWLNGCVAIERTVNVAKGVRFDKKKSKHAAQWIIPILFILILGTIVHEPIHHDLFKYTTQKSKSINNNLTLNIAMENETNFEYEIEHNILCVTRYSQSVQTYNTITLFFHLIVPFFANLSSALFIILGTARRRSAAQKRQTFKEHVVEQIIEHKQLLLSPIILLILALPHLIISLVSGCVDPSSNPWLYLSAYFIYFIPPILVFIVFVLPSELYKKTFKDSIKRWQRHICQ |
| Ga0209914_100012893 | F039434 | N/A | MGILKGKDAALEHIEKSKTAFLATLSEAEKGPSSNSMPPKDHFILKFDRNTIKNLKGRVYETMKQYSYEQRGESIPVFVNNREGGDEPTTLNPIKPETPTVGQQYVACIYDDLKIIDALILIEWNQVDELVKTANARRKSVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |