NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256317_1103375

Scaffold Ga0256317_1103375


Overview

Basic Information
Taxon OID3300024862 Open in IMG/M
Scaffold IDGa0256317_1103375 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)625
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012344Metagenome / Metatranscriptome281Y
F060919Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0256317_11033751F012344GGAGVKLSEVLDALMEGKPITRAAWEQKYMYYDKDENVFVYHYSEDEEWELMSWSLDLEPRDVIADDWDIDYWDTEDIRT
Ga0256317_11033752F060919GAGMTGREALDKLQAGFTLRRESWEPDEKCKAYFSDNLWSIRVECDSISLSPEHVPDDPKFANYMSIFDAIDAGEFLMDDWEIVE

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