Scaffold Ga0256302_1051756

Overview

Basic Information

• Taxon OID: 3300024571
• Scaffold ID: Ga0256302_1051756
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 964
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256302_10517562	F034924	GAGG	LPIYRVFGTKYVNYYTIVSAADEYQAAEIANSRPTIDWDIIPIDDEIEATDVFLDDDTSIDLQLNM
Ga0256302_10517563	F001019	AGG	MTHYGASLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDMPIFETESLTKAVEYCYNLDKDFFVRTYAEWEMREMLADL
Ga0256302_10517564	F000441	AGGAGG	MKMSDAYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQVGDRG